Transcript: SRD5A3-AS1:16

Basic information

LNCipedia transcript ID: SRD5A3-AS1:16 
HGNC Gene Symbol: SRD5A3-AS1    
HGNC Full Gene Name: SRD5A3 antisense RNA 1
Ensembl Gene ID: ENSG00000249700
Ensembl Transcript ID: ENST00000510637
RefSeq ID: NR_037969
Location (hg19): chr4:56232768-56251747
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 926 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000510637.1; RP11-148K14.2-002; OTTHUMT00000361586.1; NONHSAT096445; NR_037969; ENST00000510637.5; NR_037969.1
Alternative gene names: ENSG00000249700.1; RP11-148K14.2; OTTHUMG00000160655.4; ENSG00000249700.4; SRD5A3-AS1; ENSG00000249700.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.7149 non-coding 
CPAT coding probability 5.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRD5A3-AS1:16 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLOCK-1:1
4.0 SRD5A3-AS1:16
4.1 SRD5A3-AS1:16
5.0 SRD5A3-AS1:16
5.1 SRD5A3-AS1:16
5.2 SRD5A3-AS1:16