Transcript: SRD5A3-AS1:21

Basic information

LNCipedia transcript ID: SRD5A3-AS1:21 
HGNC Gene Symbol: SRD5A3-AS1    
HGNC Full Gene Name: SRD5A3 antisense RNA 1
Ensembl Gene ID: ENSG00000249700
Ensembl Transcript ID: ENST00000433175
Location (hg19): chr4:56230138-56249563
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1617 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000433175.2; RP11-148K14.2-001; OTTHUMT00000361585.2; NONHSAT096443; ENST00000433175.6
Alternative gene names: ENSG00000249700.1; RP11-148K14.2; OTTHUMG00000160655.4; ENSG00000249700.4; SRD5A3-AS1; ENSG00000249700.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.9691 non-coding 
CPAT coding probability 0.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRD5A3-AS1:21 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CLOCK-1:2
4.0 SRD5A3-AS1:21
4.1 SRD5A3-AS1:21
5.0 SRD5A3-AS1:21
5.1 SRD5A3-AS1:21
5.2 SRD5A3-AS1:21