Transcript: SREBF2-AS1:6

Basic information

LNCipedia transcript ID: SREBF2-AS1:6 
LNCipedia gene ID: SREBF2-AS1
Location (hg19): chr22:42222205-42228915
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6711 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000184068.2|MICT00000234401.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 6.8502 non-coding 
CPAT coding probability 3.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SREBF2-AS1:6 no no no no

Available literature

  1. Luo (2018), Long non-coding RNAs RP5-821D11.7, APCDD1L-AS1 and RP11-277P12.9 were associated with the prognosis of lung squamous cell carcinoma., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SHISA8-1:2
5.0 lnc-SHISA8-1:2
5.1 SREBF2-AS1:3
5.2 SREBF2-AS1:6