Transcript: SRGAP3-AS2:3

Basic information

LNCipedia transcript ID: SRGAP3-AS2:3 
LNCipedia gene ID: SRGAP3-AS2
RefSeq ID: NR_121663
Location (hg19): chr3:9234177-9236137
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1293 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121663; NR_121663.1
Alternative gene names: ; LOC101927416


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -105.4593 non-coding 
CPAT coding probability 19.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS2:3 no no no no

Available literature

  1. Hou (2014), Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THUMPD3-3:5
4.0 SRGAP3-AS2:3
4.1 SRGAP3-AS2:3
5.0 SRGAP3-AS2:3
5.1 SRGAP3-AS2:3
5.2 SRGAP3-AS2:3