Transcript: SRGAP3-AS3:2

Basic information

LNCipedia transcript ID: SRGAP3-AS3:2 
LNCipedia gene ID: SRGAP3-AS3
Location (hg19): chr3:9258579-9261192
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1219 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000546112.1; SRGAP3-AS3-201
Alternative gene names: ENSG00000227929.2; SRGAP3-AS3; OTTHUMG00000155028.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -30.7963 non-coding 
CPAT coding probability 15.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-THUMPD3-2:1
4.0 SRGAP3-AS3:2
4.1 SRGAP3-AS3:2
5.0 SRGAP3-AS3:2
5.1 SRGAP3-AS3:2
5.2 SRGAP3-AS3:2