Transcript: SRGAP3-AS4:3

Basic information

LNCipedia transcript ID: SRGAP3-AS4:3 
LNCipedia gene ID: SRGAP3-AS4
Location (hg19): chr3:9291438-9293990
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 365 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00006780; NONHSAT087753
Alternative gene names: XLOC_002573; linc-THUMPD3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.0322 non-coding 
CPAT coding probability 2.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SRGAP3-AS4:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-THUMPD3-1:2
3.1 lnc-THUMPD3-1:2
4.0 SRGAP3-AS4:3
4.1 SRGAP3-AS4:3
5.0 SRGAP3-AS4:3
5.1 SRGAP3-AS4:3
5.2 SRGAP3-AS4:3