Transcript: SSTR5-AS1:3

Basic information

LNCipedia transcript ID: SSTR5-AS1:3 
HGNC Gene Symbol: SSTR5-AS1    
HGNC Full Gene Name: SSTR5 antisense RNA 1
Ensembl Gene ID: ENSG00000261713
Ensembl Transcript ID: ENST00000566499
Location (hg19): chr16:1116494-1128707
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 479 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000566499.1; RP11-161M6.4-003; OTTHUMT00000420786.1; NONHSAT051916
Alternative gene names: ENSG00000261713.1; RP11-161M6.4; OTTHUMG00000172831.1; ENSG00000261713.2; SSTR5-AS1; ENSG00000261713.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.5519 non-coding 
CPAT coding probability 24.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SSTR5-AS1:3 no no no no

Available literature

  1. Ramnarine (2018), The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications., Gigascience


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-1:2
4.0 SSTR5-AS1:3
4.1 SSTR5-AS1:3
5.0 SSTR5-AS1:3
5.1 SSTR5-AS1:3
5.2 SSTR5-AS1:3