Transcript: SSTR5-AS1:7

Basic information

LNCipedia transcript ID: SSTR5-AS1:7 
LNCipedia gene ID: SSTR5-AS1
Location (hg19): chr16:1115299-1116349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1051 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT051913
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 75.9669 coding 
CPAT coding probability 94.16% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
SSTR5-AS1:7 no no no no

Available literature

  1. Ramnarine (2018), The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications., Gigascience


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1QTNF8-1:7
4.0 SSTR5-AS1:7
4.1 SSTR5-AS1:7
5.0 SSTR5-AS1:7
5.1 SSTR5-AS1:7
5.2 SSTR5-AS1:7