Transcript: SSTR5-AS1:9

Basic information

LNCipedia transcript ID: SSTR5-AS1:9 
LNCipedia gene ID: SSTR5-AS1
Location (hg19): chr16:1126379-1128621
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 2243 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000261713.2|FTMT26200000073.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 31.3758 non-coding 
CPAT coding probability 21.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SSTR5-AS1:9 no no no no

Available literature

  1. Ramnarine (2018), The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications., Gigascience


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 SSTR5-AS1:9
5.0 SSTR5-AS1:9
5.1 SSTR5-AS1:9
5.2 SSTR5-AS1:9