Transcript: ST3GAL5-AS1:2

Basic information

LNCipedia transcript ID: ST3GAL5-AS1:2 
LNCipedia gene ID: ST3GAL5-AS1
Location (hg19): chr2:86116278-86144322
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3568 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003756; NONHSAT072062
Alternative gene names: XLOC_001558; linc-PTCD3-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -42.4037 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL5-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATOH8-1:1
3.1 lnc-ATOH8-2:1
4.0 ST3GAL5-AS1:2
4.1 ST3GAL5-AS1:2
5.0 ST3GAL5-AS1:2
5.1 ST3GAL5-AS1:2
5.2 ST3GAL5-AS1:2