Transcript: ST3GAL5-AS1:4

Basic information

LNCipedia transcript ID: ST3GAL5-AS1:4 
LNCipedia gene ID: ST3GAL5-AS1
Location (hg19): chr2:86116376-86132077
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2151 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00003757; NONHSAT072064
Alternative gene names: XLOC_001558; linc-PTCD3-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 17.7144 non-coding 
CPAT coding probability 1.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST3GAL5-AS1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATOH8-1:3
3.1 lnc-ATOH8-2:3
4.0 ST3GAL5-AS1:4
4.1 ST3GAL5-AS1:4
5.0 ST3GAL5-AS1:4
5.1 ST3GAL5-AS1:4
5.2 ST3GAL5-AS1:4