Transcript: ST7-AS1:1

Basic information

LNCipedia transcript ID: ST7-AS1:1 
HGNC Gene Symbol: ST7-AS1    
HGNC Full Gene Name: ST7 antisense RNA 1
Ensembl Gene ID: ENSG00000227199
Ensembl Transcript ID: ENST00000456775
RefSeq ID: NR_002330
Location (hg19): chr7:116592500-116594388
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1889 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000456775.1; ST7-AS1-001; OTTHUMT00000095366.1; NONHSAT122914; NR_002330.1
Alternative gene names: ENSG00000227199.1; ST7-AS1; OTTHUMG00000039524.1; ST7AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -89.1431 non-coding 
CPAT coding probability 33.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST7-AS1:1 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC106873.4.1-1:1
4.0 ST7-AS1:1
4.1 ST7-AS1:1
5.0 ST7-AS1:1
5.1 ST7-AS1:1
5.2 ST7-AS1:1