Transcript: ST7-AS1:2

Basic information

LNCipedia transcript ID: ST7-AS1:2 
LNCipedia gene ID: ST7-AS1
Location (hg19): chr7:116592425-116593427
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1003 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1292:1
Alternative gene names: ST7AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -259.6135 non-coding 
CPAT coding probability 0.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ST7-AS1:2 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 ST7-AS1:2
4.1 ST7-AS1:2
5.0 ST7-AS1:2
5.1 ST7-AS1:2
5.2 ST7-AS1:2