Transcript: ST7-AS2:4

Basic information

LNCipedia transcript ID: ST7-AS2:4 
HGNC Gene Symbol: ST7-AS2    
HGNC Full Gene Name: ST7 antisense RNA 2
Ensembl Gene ID: ENSG00000226367
Ensembl Transcript ID: ENST00000434993
Location (hg19): chr7:116752346-116785614
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 918 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000434993.1; ST7-AS2-004; OTTHUMT00000095370.3; NONHSAT122926; ENST00000434993.5
Alternative gene names: ENSG00000226367.1; ST7-AS2; OTTHUMG00000039525.4; ENSG00000226367.5; ST7AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 50.2959 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
ST7-AS2:4 yes no no no

Available literature

  1. Vincent (2002), The RAY1/ST7 tumor-suppressor locus on chromosome 7q31 represents a complex multi-transcript system., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WNT2-1:3
4.0 ST7-AS2:4
4.1 ST7-AS2:4
5.0 ST7-AS2:4
5.1 ST7-AS2:4
5.2 ST7-AS2:4