Transcript: STPG3-AS1:3

Basic information

LNCipedia transcript ID: STPG3-AS1:3 
HGNC Gene Symbol: STPG3-AS1    
HGNC Full Gene Name: STPG3 antisense RNA 1
Ensembl Gene ID: ENSG00000275549
Ensembl Transcript ID: ENST00000612170
RefSeq ID: NR_038389
Location (hg19): chr9:140144671-140147949
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1701 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; NONCODE v4; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000416962; NONHSAT135714; NR_038389; ENST00000612170.1; NR_038389.1
Alternative gene names: ENSG00000256529; BX255925.2; ENSG00000275549.1; C9orf173-AS1; ; STPG3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.4031 non-coding 
CPAT coding probability 4.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STPG3-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FAM166A-1:1
3.1 lnc-FAM166A-1:1
4.0 C9orf173-AS1:1
4.1 C9orf173-AS1:1
5.0 C9orf173-AS1:1
5.1 STPG3-AS1:2
5.2 STPG3-AS1:3