Transcript: STX17-AS1:1

Basic information

LNCipedia transcript ID: STX17-AS1:1 
LNCipedia gene ID: STX17-AS1
Location (hg19): chr9:102648608-102668883
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 544 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000529965.1; RP11-60I3.5-001; OTTHUMT00000388605.1
Alternative gene names: ENSG00000255145.1; RP11-60I3.5; OTTHUMG00000166238.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -22.0881 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STX17-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ERP44-2:1
4.0 STX17-AS1:1
4.1 STX17-AS1:1
5.0 STX17-AS1:1
5.1 STX17-AS1:1
5.2 STX17-AS1:1