Transcript: STXBP5-AS1:15

Basic information

LNCipedia transcript ID: STXBP5-AS1:15 
LNCipedia gene ID: STXBP5-AS1
Location (hg19): chr6:147163334-147525741
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1973 bp
Exons: 10
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000233452.2|FTMT22100065859.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.6819 non-coding 
CPAT coding probability 0.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STXBP5-AS1:15 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  2. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 STXBP5-AS1:15
5.0 STXBP5-AS1:15
5.1 STXBP5-AS1:15
5.2 STXBP5-AS1:15