Transcript: STXBP5-AS1:3

Basic information

LNCipedia transcript ID: STXBP5-AS1:3 
HGNC Gene Symbol: STXBP5-AS1    
HGNC Full Gene Name: STXBP5 antisense RNA 1
Ensembl Gene ID: ENSG00000233452
Ensembl Transcript ID: ENST00000427394
Location (hg19): chr6:147163702-147525676
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1821 bp
Exons: 11
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427394; ENST00000427394.1; RP11-497D6.4-003; OTTHUMT00000042593.3; ENST00000427394.5
Alternative gene names: ENSG00000233452; RP11-497D6.4; ENSG00000233452.1; OTTHUMG00000015762.3; ENSG00000233452.2; STXBP5-AS1; ENSG00000233452.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6819 non-coding 
CPAT coding probability 1.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
STXBP5-AS1:3 yes no no no

Available literature

  1. Wang (2015), Genome-wide differential expression of synaptic long noncoding RNAs in autism spectrum disorder., Transl Psychiatry
  2. Hughes (2014), CEBPA-regulated lncRNAs, new players in the study of acute myeloid leukemia., J Hematol Oncol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SHPRH-2:2
3.1 lnc-SHPRH-2:2
4.0 STXBP5-AS1:3
4.1 STXBP5-AS1:3
5.0 STXBP5-AS1:3
5.1 STXBP5-AS1:3
5.2 STXBP5-AS1:3