Transcript: TAB2-AS1:7

Basic information

LNCipedia transcript ID: TAB2-AS1:7 
LNCipedia gene ID: TAB2-AS1
Location (hg19): chr6:149564435-149565137
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 562 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000424421.1; RP1-111D6.2-001; OTTHUMT00000042629.1; NONHSAT115491
Alternative gene names: ENSG00000225924.1; RP1-111D6.2; OTTHUMG00000015781.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.0707 non-coding 
CPAT coding probability 0.03% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TAB2-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZC3H12D-1:1
4.0 lnc-ZC3H12D-1:1
4.1 lnc-ZC3H12D-1:1
5.0 lnc-ZC3H12D-1:1
5.1 TAB2-AS1:4
5.2 TAB2-AS1:7