Transcript: TBX18-AS1:10

Basic information

LNCipedia transcript ID: TBX18-AS1:10 
HGNC Gene Symbol: TBX18-AS1    
HGNC Full Gene Name: TBX18 antisense RNA 1
Ensembl Gene ID: ENSG00000228290
Ensembl Transcript ID: ENST00000586398
Location (hg19): chr6:85399178-85419164
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT113821; ENST00000586398.1; ENST00000586398.5
Alternative gene names: ENSG00000228290.2; RP11-132M7.3; ENSG00000228290.6; ; TBX18-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.2264 non-coding 
CPAT coding probability 8.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX18-AS1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRAP2-3:7
4.0 TBX18-AS1:10
4.1 TBX18-AS1:10
5.0 TBX18-AS1:10
5.1 TBX18-AS1:10
5.2 TBX18-AS1:10