Transcript: TBX18-AS1:17

Basic information

LNCipedia transcript ID: TBX18-AS1:17 
HGNC Gene Symbol: TBX18-AS1    
HGNC Full Gene Name: TBX18 antisense RNA 1
Ensembl Gene ID: ENSG00000228290
Ensembl Transcript ID: ENST00000441863
Location (hg19): chr6:85404705-85419245
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 382 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441863.1; RP11-132M7.3-002; OTTHUMT00000041377.1
Alternative gene names: ENSG00000228290.1; RP11-132M7.3; OTTHUMG00000015128.1; ENSG00000228290.2; ENSG00000228290.6; ; TBX18-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -339.1024 non-coding 
CPAT coding probability 2.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX18-AS1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MRAP2-3:2
4.0 TBX18-AS1:17
4.1 TBX18-AS1:17
5.0 TBX18-AS1:17
5.1 TBX18-AS1:17
5.2 TBX18-AS1:17