Transcript: TBX5-AS1:6

Basic information

LNCipedia transcript ID: TBX5-AS1:6 
LNCipedia gene ID: TBX5-AS1
Location (hg19): chr12:114849094-114849329
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 223 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT030880
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -43.3678 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TBX5-AS1:6 no no no no

Available literature

  1. Wang (2015), The long noncoding RNA LINC01207 promotes proliferation of lung adenocarcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP11-116D17.1.1-13:6
4.0 TBX5-AS1:6
4.1 TBX5-AS1:6
5.0 TBX5-AS1:6
5.1 TBX5-AS1:6
5.2 TBX5-AS1:6