Transcript: TEMN3-AS1:3

Basic information

LNCipedia transcript ID: TEMN3-AS1:3 
HGNC Gene Symbol: TEMN3-AS1    
HGNC Full Gene Name: TENM3 antisense transcript 1
Ensembl Gene ID: ENSG00000251336
Ensembl Transcript ID: ENST00000510211
Location (hg19): chr4:182741172-182751126
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 401 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007919; ENST00000510211; ENST00000510211.1; RP11-540E16.2-001; OTTHUMT00000361896.1; NONHSAT099421
Alternative gene names: XLOC_004193; linc-AGA-6; ENSG00000251336; RP11-540E16.2; ENSG00000251336.1; OTTHUMG00000160718.1; TEMN3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.2201 non-coding 
CPAT coding probability 1.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TEMN3-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DCTD-3:1
3.1 lnc-DCTD-5:1
4.0 lnc-DCTD-5:1
4.1 lnc-DCTD-5:1
5.0 lnc-DCTD-5:1
5.1 TEMN3-AS1:2
5.2 TEMN3-AS1:3