Transcript: TGFA-IT1:2

Basic information

LNCipedia transcript ID: TGFA-IT1:2 
HGNC Gene Symbol: TGFA-IT1    
HGNC Full Gene Name: TGFA intronic transcript 1
Ensembl Gene ID: ENSG00000224606
Ensembl Transcript ID: ENST00000441238
Location (hg19): chr2:70694517-70695627
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 436 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441238.1; TGFA-IT1-001; OTTHUMT00000331352.1; NONHSAT071499
Alternative gene names: ENSG00000224606.1; TGFA-IT1; OTTHUMG00000153490.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.5959 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TGFA-IT1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ADD2-1:1
4.0 TGFA-IT1:2
4.1 TGFA-IT1:2
5.0 TGFA-IT1:2
5.1 TGFA-IT1:2
5.2 TGFA-IT1:2