Transcript: TGFB2-OT1:1

Basic information

LNCipedia transcript ID: TGFB2-OT1:1 
LNCipedia gene ID: TGFB2-OT1
RefSeq ID: NR_125715
Location (hg19): chr1:218615968-218617337
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1370 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_125715; NR_125715.1
Alternative gene names: FLJ11812; TGFB2-OT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.9764 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TGFB2-OT1:1 yes no no no

Available literature

  1. Lu (2015), A 3'UTR-associated RNA, FLJ11812 maintains stemness of human embryonic stem cells by targeting miR-4459., Stem Cells Dev.
  2. Ge (2014), Identification of a novel MTOR activator and discovery of a competing endogenous RNA regulating autophagy in vascular endothelial cells., Autophagy


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C1orf143-2:1
4.0 TGFB2-OT1:1
4.1 TGFB2-OT1:1
5.0 TGFB2-OT1:1
5.1 TGFB2-OT1:1
5.2 TGFB2-OT1:1