Transcript: THRIL:2

Basic information

LNCipedia transcript ID: THRIL:2 
LNCipedia gene ID: THRIL
RefSeq ID: NR_110375
Location (hg19): chr12:125509989-125511969
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1981 bp
Exons: 1
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110375; NR_110375.1
Alternative gene names: Linc1992; TCONS_00020260; BRI3BP-AS1; THRIL


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.9041 non-coding 
CPAT coding probability 0.42% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THRIL:2 no no no no

Available literature

  1. Wu (2015), Association of large intergenic noncoding RNA expression with disease activity and organ damage in systemic lupus erythematosus., Arthritis Res. Ther.
  2. Li (2014), The long noncoding RNA THRIL regulates TNFα expression through its interaction with hnRNPL., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DHX37-1:2
4.0 THRIL:2
4.1 THRIL:2
5.0 THRIL:2
5.1 THRIL:2
5.2 THRIL:2