Transcript: THSD4-AS1:7

Basic information

LNCipedia transcript ID: THSD4-AS1:7 
HGNC Gene Symbol: THSD4-AS1    
HGNC Full Gene Name: THSD4 antisense RNA 1
Ensembl Gene ID: ENSG00000259964
Ensembl Transcript ID: ENST00000561571
Location (hg19): chr15:71439989-71481368
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 554 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561571.1; RP11-673C5.2-006; OTTHUMT00000420813.1; NONHSAT047031; ENST00000561571.5
Alternative gene names: ENSG00000259964.1; RP11-673C5.2; OTTHUMG00000172838.1; ENSG00000259964.2; ENSG00000259964.6; THSD4-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -44.0639 non-coding 
CPAT coding probability 3.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
THSD4-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CT62-1:2
4.0 THSD4-AS1:7
4.1 THSD4-AS1:7
5.0 THSD4-AS1:7
5.1 THSD4-AS1:7
5.2 THSD4-AS1:7