Transcript: TLX1NB:1

Basic information

LNCipedia transcript ID: TLX1NB:1 
LNCipedia gene ID: TLX1NB
Location (hg19): chr10:102874956-102901023
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 760 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000441069; ENST00000441069.1; RP11-108L7.11-003; OTTHUMT00000087714.1; NONHSAT016015
Alternative gene names: ENSG00000236311; RP11-108L7.11; ENSG00000236311.1; OTTHUMG00000018925.3; TD1; TDI; APT-B7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -298.0548 non-coding 
CPAT coding probability 8.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TLX1NB:1 yes no no no

Available literature

  1. Greene (2007), A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZD7-2:1
3.1 lnc-PDZD7-4:1
4.0 TLX1NB:1
4.1 TLX1NB:1
5.0 TLX1NB:1
5.1 TLX1NB:1
5.2 TLX1NB:1