Transcript: TLX1NB:3

Basic information

LNCipedia transcript ID: TLX1NB:3 
HGNC Gene Symbol: TLX1NB    
HGNC Full Gene Name: TLX1 neighbor
Ensembl Gene ID: ENSG00000236311
Ensembl Transcript ID: ENST00000445873
Location (hg19): chr10:102849078-102890883
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1862 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000445873; ENST00000445873.1; RP11-108L7.11-001; OTTHUMT00000049925.1; ENST00000445873.5
Alternative gene names: ENSG00000236311; RP11-108L7.11; ENSG00000236311.1; OTTHUMG00000018925.3; ENSG00000236311.6; TLX1NB; TD1; TDI; APT-B7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -129.5958 non-coding 
CPAT coding probability 20.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TLX1NB:3 yes no no no

Available literature

  1. Greene (2007), A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PDZD7-2:3
3.1 lnc-PDZD7-4:3
4.0 TLX1NB:3
4.1 TLX1NB:3
5.0 TLX1NB:3
5.1 TLX1NB:3
5.2 TLX1NB:3