Transcript: TM4SF1-AS1:2

Basic information

LNCipedia transcript ID: TM4SF1-AS1:2 
LNCipedia gene ID: TM4SF1-AS1
RefSeq ID: NR_109809
Location (hg19): chr3:149095565-149104370
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 931 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_109809; NR_109809.1
Alternative gene names: ; TM4SF1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -318.3414 non-coding 
CPAT coding probability 67.02% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TM4SF1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TM4SF4-1:4
4.0 TM4SF1-AS1:2
4.1 TM4SF1-AS1:2
5.0 TM4SF1-AS1:2
5.1 TM4SF1-AS1:2
5.2 TM4SF1-AS1:2