Transcript: TM4SF19-AS1:1

Basic information

LNCipedia transcript ID: TM4SF19-AS1:1 
HGNC Gene Symbol: TM4SF19-AS1    
HGNC Full Gene Name: TM4SF19 antisense RNA 1
Ensembl Gene ID: ENSG00000235897
Ensembl Transcript ID: ENST00000420226
Location (hg19): chr3:196045201-196050544
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 322 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420226.1; TM4SF19-AS1-002; OTTHUMT00000341145.1; NONHSAT094325
Alternative gene names: ENSG00000235897.1; TM4SF19-AS1; OTTHUMG00000155669.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -76.7782 non-coding 
CPAT coding probability 0.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TM4SF19-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC069257.9.1-3:1
4.0 TM4SF19-AS1:1
4.1 TM4SF19-AS1:1
5.0 TM4SF19-AS1:1
5.1 TM4SF19-AS1:1
5.2 TM4SF19-AS1:1