Transcript: TMEM108-AS1:1

Basic information

LNCipedia transcript ID: TMEM108-AS1:1 
HGNC Gene Symbol: TMEM108-AS1    
HGNC Full Gene Name: TMEM108 antisense RNA 1
Ensembl Gene ID: ENSG00000251011
Ensembl Transcript ID: ENST00000505721
Location (hg19): chr3:132965270-132976032
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2427 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505721.1; RP11-402L6.1-001; OTTHUMT00000357036.1; NONHSAT092181
Alternative gene names: ENSG00000251011.1; RP11-402L6.1; OTTHUMG00000159722.1; ENSG00000251011.5; TMEM108-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.5389 non-coding 
CPAT coding probability 0.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM108-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TOPBP1-2:1
4.0 TMEM108-AS1:1
4.1 TMEM108-AS1:1
5.0 TMEM108-AS1:1
5.1 TMEM108-AS1:1
5.2 TMEM108-AS1:1