Transcript: TMEM161B-AS1:19

Basic information

LNCipedia transcript ID: TMEM161B-AS1:19 
HGNC Gene Symbol: TMEM161B-AS1    
HGNC Full Gene Name: TMEM161B antisense RNA 1
Ensembl Gene ID: ENSG00000247828
Ensembl Transcript ID: ENST00000506584
Location (hg19): chr5:87564864-87583473
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 717 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000506584; ENST00000506584.1; TMEM161B-AS1-012; OTTHUMT00000370152.1; NONHSAT102619; ENST00000506584.5
Alternative gene names: ENSG00000247828; CTC-358I24.1; ENSG00000247828.2; TMEM161B-AS1; OTTHUMG00000162704.3; ENSG00000247828.3; ENSG00000247828.7; linc-POLR3G-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.1144 non-coding 
CPAT coding probability 8.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM161B-AS1:19 yes no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Sun (2014), Computational evidence of NAGNAG alternative splicing in human large intergenic noncoding RNA., Biomed Res Int
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.
  4. Chodroff (2010), Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASA1-3:9
3.1 lnc-RASA1-3:9
4.0 TMEM161B-AS1:19
4.1 TMEM161B-AS1:19
5.0 TMEM161B-AS1:19
5.1 TMEM161B-AS1:19
5.2 TMEM161B-AS1:19