Transcript: TMEM161B-AS1:23

Basic information

LNCipedia transcript ID: TMEM161B-AS1:23 
LNCipedia gene ID: TMEM161B-AS1
Location (hg19): chr5:87577114-87581668
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1681 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00010010; NONHSAT102624
Alternative gene names: XLOC_004457; linc-POLR3G-10; linc-POLR3G-8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.1531 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TMEM161B-AS1:23 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Sun (2014), Computational evidence of NAGNAG alternative splicing in human large intergenic noncoding RNA., Biomed Res Int
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.
  4. Chodroff (2010), Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes., Genome Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RASA1-3:12
3.1 lnc-RASA1-3:12
4.0 TMEM161B-AS1:23
4.1 TMEM161B-AS1:23
5.0 TMEM161B-AS1:23
5.1 TMEM161B-AS1:23
5.2 TMEM161B-AS1:23