Transcript: TMEM92-AS1:4

Basic information

LNCipedia transcript ID: TMEM92-AS1:4 
LNCipedia gene ID: TMEM92-AS1
Location (hg19): chr17:48358988-48362214
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2636 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00025694; NONHSAT054631
Alternative gene names: XLOC_012515; linc-COL1A1-2; RP11-893F2.9; lncRNA-508851; TCONS_00025237


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 1 coding 
Peptide Confidence Reading frame
CQKGWGPPGRVSKGGR 100% sense-3
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.3273 non-coding 
CPAT coding probability 35.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TMEM92-AS1:4 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther
  2. Yuan (2014), A long noncoding RNA activated by TGF-β promotes the invasion-metastasis cascade in hepatocellular carcinoma., Cancer Cell


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-COL1A1-2:3
3.1 lnc-COL1A1-4:3
4.0 TMEM92-AS1:4
4.1 TMEM92-AS1:4
5.0 TMEM92-AS1:4
5.1 TMEM92-AS1:4
5.2 TMEM92-AS1:4