Transcript: TNKS2-AS1:3

Basic information

LNCipedia transcript ID: TNKS2-AS1:3 
HGNC Gene Symbol: TNKS2-AS1    
HGNC Full Gene Name: TNKS2 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000228701
Ensembl Transcript ID: ENST00000432246
Location (hg19): chr10:93542693-93557953
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 609 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00018024; ENST00000432246.1; RP11-251A15.4-002; OTTHUMT00000049378.1; NONHSAT015639
Alternative gene names: XLOC_008905; linc-PPP1R3C; ENSG00000228701.1; RP11-251A15.4; OTTHUMG00000018750.1; TNKS2-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6475 non-coding 
CPAT coding probability 4.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNKS2-AS1:3 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FGFBP3-1:2
3.1 lnc-FGFBP3-1:2
4.0 TNKS2-AS1:3
4.1 TNKS2-AS1:3
5.0 TNKS2-AS1:3
5.1 TNKS2-AS1:3
5.2 TNKS2-AS1:3