Transcript: TNKS2-AS1:4

Basic information

LNCipedia transcript ID: TNKS2-AS1:4 
LNCipedia gene ID: TNKS2-AS1
RefSeq ID: NR_108070
Location (hg19): chr10:93542596-93557953
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 706 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_108070; NR_108070.1
Alternative gene names: ; TNKS2-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.6475 non-coding 
CPAT coding probability 5.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNKS2-AS1:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FGFBP3-1:5
4.0 TNKS2-AS1:4
4.1 TNKS2-AS1:4
5.0 TNKS2-AS1:4
5.1 TNKS2-AS1:4
5.2 TNKS2-AS1:4