Transcript: TNR-IT1:1

Basic information

LNCipedia transcript ID: TNR-IT1:1 
HGNC Gene Symbol: TNR-IT1    
HGNC Full Gene Name: TNR intronic transcript 1
Ensembl Gene ID: ENSG00000235628
Ensembl Transcript ID: ENST00000455447
Location (hg19): chr1:175507911-175525954
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 630 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000455447.1; TNR-IT1-001; OTTHUMT00000084592.1; NONHSAT007756
Alternative gene names: ENSG00000235628.1; TNR-IT1; OTTHUMG00000034946.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -189.4682 non-coding 
CPAT coding probability 2.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TNR-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RFWD2-2:1
4.0 TNR-IT1:1
4.1 TNR-IT1:1
5.0 TNR-IT1:1
5.1 TNR-IT1:1
5.2 TNR-IT1:1