Transcript: TOB1-AS1:4

Basic information

LNCipedia transcript ID: TOB1-AS1:4 
LNCipedia gene ID: TOB1-AS1
Location (hg19): chr17:48944072-48945928
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1579 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA580:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -151.373 non-coding 
CPAT coding probability 15.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TOB1-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 TOB1-AS1:4
4.1 TOB1-AS1:4
5.0 TOB1-AS1:4
5.1 TOB1-AS1:4
5.2 TOB1-AS1:4