Transcript: TP53TG1:11

Basic information

LNCipedia transcript ID: TP53TG1:11 
LNCipedia gene ID: TP53TG1
Location (hg19): chr7:86954666-86974808
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 707 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00012855
Alternative gene names: XLOC_006516; linc-C7orf23; H_RG012D21.9; LINC00096


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.5802 non-coding 
CPAT coding probability 4.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TP53TG1:11 no no no no

Available literature

  1. Xiao (2018), TP53TG1 enhances cisplatin sensitivity of non-small cell lung cancer cells through regulating miR-18a/PTEN axis., Cell Biosci
  2. Kabacik (2015), Time, dose and ataxia telangiectasia mutated (ATM) status dependency of coding and noncoding RNA expression after ionizing radiation exposure., Radiat. Res.
  3. Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
  4. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  5. Takei (1998), Isolation of a novel TP53 target gene from a colon cancer cell line carrying a highly regulated wild-type TP53 expression system., Genes Chromosomes Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCB4-1:5
3.1 lnc-ABCB4-1:5
4.0 TP53TG1:11
4.1 TP53TG1:11
5.0 TP53TG1:11
5.1 TP53TG1:11
5.2 TP53TG1:11