Transcript: TP53TG1:6

Basic information

LNCipedia transcript ID: TP53TG1:6 
HGNC Gene Symbol: TP53TG1    
HGNC Full Gene Name: TP53 target 1
Ensembl Gene ID: ENSG00000182165
Ensembl Transcript ID: ENST00000359941
Location (hg19): chr7:86954541-86974831
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 855 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000359941; ENST00000359941.5; TP53TG1-001; OTTHUMT00000253374.3; ENST00000359941.9
Alternative gene names: ENSG00000182165; TP53TG1; ENSG00000182165.12; OTTHUMG00000130822.4; ENSG00000182165.13; ENSG00000182165.17; H_RG012D21.9; LINC00096


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.5802 non-coding 
CPAT coding probability 3.98% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TP53TG1:6 no no no no

Available literature

  1. Xiao (2018), TP53TG1 enhances cisplatin sensitivity of non-small cell lung cancer cells through regulating miR-18a/PTEN axis., Cell Biosci
  2. Kabacik (2015), Time, dose and ataxia telangiectasia mutated (ATM) status dependency of coding and noncoding RNA expression after ionizing radiation exposure., Radiat. Res.
  3. Pastori (2015), The Bromodomain protein BRD4 controls HOTAIR, a long noncoding RNA essential for glioblastoma proliferation., Proc. Natl. Acad. Sci. U.S.A.
  4. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  5. Takei (1998), Isolation of a novel TP53 target gene from a colon cancer cell line carrying a highly regulated wild-type TP53 expression system., Genes Chromosomes Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ABCB4-1:2
3.1 lnc-ABCB4-1:2
4.0 TP53TG1:6
4.1 TP53TG1:6
5.0 TP53TG1:6
5.1 TP53TG1:6
5.2 TP53TG1:6