Transcript: TPM1-AS:7

Basic information

LNCipedia transcript ID: TPM1-AS:7 
LNCipedia gene ID: TPM1-AS
Location (hg19): chr15:63338233-63341487
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3255 bp
Exons: 1
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000259498.1|ENST00000561241.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -66.2054 non-coding 
CPAT coding probability 92.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPM1-AS:7 yes no no no

Available literature

  1. Huang (2017), Natural antisense transcript TPM1-AS regulates the alternative splicing of tropomyosin I through an interaction with RNA-binding motif protein 4., Int. J. Biochem. Cell Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-RPS27L-2:3
5.0 lnc-RPS27L-2:3
5.1 TPM1-AS:3
5.2 TPM1-AS:7