Transcript: TPT1-AS1:1

Basic information

LNCipedia transcript ID: TPT1-AS1:1 
LNCipedia gene ID: TPT1-AS1
RefSeq ID: NR_024458
Location (hg19): chr13:45915480-45965618
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1526 bp
Exons: 11
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000517509; ENST00000517509.1; TPT1-AS1-003; OTTHUMT00000374919.1; NONHSAT033563; NR_024458.1
Alternative gene names: ENSG00000170919; XXyac-R12DG2.2; ENSG00000170919.9; TPT1-AS1; OTTHUMG00000016851.2; ENSG00000170919.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3346 non-coding 
CPAT coding probability 78.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:1 yes no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:1
3.1 lnc-GTF2F2-2:1
4.0 TPT1-AS1:1
4.1 TPT1-AS1:1
5.0 TPT1-AS1:1
5.1 TPT1-AS1:1
5.2 TPT1-AS1:1