Transcript: TPT1-AS1:11

Basic information

LNCipedia transcript ID: TPT1-AS1:11 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45915648-45965872
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2284 bp
Exons: 9
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000405697; ENST00000405697.3; TPT1-AS1-201
Alternative gene names: ENSG00000170919; XXyac-R12DG2.2; ENSG00000170919.9; TPT1-AS1; OTTHUMG00000016851.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.4188 non-coding 
CPAT coding probability 81.97% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:11 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:9
3.1 lnc-GTF2F2-2:9
4.0 TPT1-AS1:11
4.1 TPT1-AS1:11
5.0 TPT1-AS1:11
5.1 TPT1-AS1:11
5.2 TPT1-AS1:11