Transcript: TPT1-AS1:12

Basic information

LNCipedia transcript ID: TPT1-AS1:12 
HGNC Gene Symbol: TPT1-AS1    
HGNC Full Gene Name: TPT1 antisense RNA 1
Ensembl Gene ID: ENSG00000170919
Ensembl Transcript ID: ENST00000524062
Location (hg19): chr13:45915648-45965872
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2285 bp
Exons: 8
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524062; ENST00000524062.1; TPT1-AS1-001; OTTHUMT00000044771.2; NONHSAT033570; ENST00000524062.5
Alternative gene names: ENSG00000170919; XXyac-R12DG2.2; ENSG00000170919.9; TPT1-AS1; OTTHUMG00000016851.2; ENSG00000170919.11; ENSG00000170919.15;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3346 non-coding 
CPAT coding probability 77.66% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:12 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:10
3.1 lnc-GTF2F2-2:10
4.0 TPT1-AS1:12
4.1 TPT1-AS1:12
5.0 TPT1-AS1:12
5.1 TPT1-AS1:12
5.2 TPT1-AS1:12