Transcript: TPT1-AS1:18

Basic information

LNCipedia transcript ID: TPT1-AS1:18 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45918514-45919045
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 225 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021546; NONHSAT033577
Alternative gene names: XLOC_010377; linc-COG3-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 2.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:18 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:14
3.1 lnc-GTF2F2-2:14
4.0 TPT1-AS1:18
4.1 TPT1-AS1:18
5.0 TPT1-AS1:18
5.1 TPT1-AS1:18
5.2 TPT1-AS1:18