Transcript: TPT1-AS1:2

Basic information

LNCipedia transcript ID: TPT1-AS1:2 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45915480-45965618
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1526 bp
Exons: 11
Sources: NONCODE v4; Refseq - Dec 2014
Alternative transcript names: NONHSAT033562; NR_024458
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.3346 non-coding 
CPAT coding probability 78.37% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
TPT1-AS1:2 yes no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2F2-2:26
4.0 TPT1-AS1:2
4.1 TPT1-AS1:2
5.0 TPT1-AS1:2
5.1 TPT1-AS1:2
5.2 TPT1-AS1:2