Transcript: TPT1-AS1:22

Basic information

LNCipedia transcript ID: TPT1-AS1:22 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45943762-45957973
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 790 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00021779; NONHSAT033584
Alternative gene names: XLOC_010376; linc-COG3-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.4542 non-coding 
CPAT coding probability 0.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:22 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:17
3.1 lnc-GTF2F2-2:17
4.0 TPT1-AS1:22
4.1 TPT1-AS1:22
5.0 TPT1-AS1:22
5.1 TPT1-AS1:22
5.2 TPT1-AS1:22