Transcript: TPT1-AS1:28

Basic information

LNCipedia transcript ID: TPT1-AS1:28 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45952665-45965014
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 817 bp
Exons: 7
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000520585; ENST00000520585.1; TPT1-AS1-006; OTTHUMT00000374931.1; NONHSAT033592
Alternative gene names: ENSG00000170919; XXyac-R12DG2.2; ENSG00000170919.9; TPT1-AS1; OTTHUMG00000016851.2; ENSG00000170919.11;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.4595 non-coding 
CPAT coding probability 1.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:28 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-2:19
3.1 lnc-GTF2F2-2:19
4.0 TPT1-AS1:28
4.1 TPT1-AS1:28
5.0 TPT1-AS1:28
5.1 TPT1-AS1:28
5.2 TPT1-AS1:28