Transcript: TPT1-AS1:47

Basic information

LNCipedia transcript ID: TPT1-AS1:47 
LNCipedia gene ID: TPT1-AS1
Location (hg19): chr13:45915569-45951262
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000170919.11|ENST00000520622.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -0.329 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
TPT1-AS1:47 no no no no

Available literature

  1. Wang (2016), LncRNA profile study reveals four-lncRNA signature associated with the prognosis of patients with anaplastic gliomas., Oncotarget


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 TPT1-AS1:47
5.0 TPT1-AS1:47
5.1 TPT1-AS1:47
5.2 TPT1-AS1:47